Questions about GenABEL (aka *ABEL) suite of packages
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Joined: Fri Feb 06, 2015 1:24 pm


Postby lkadalayil » Fri Feb 06, 2015 2:01 pm

I am a new comer to GWAs. I would like to run formetascore on a test dataset 'data' on 1 SNP. I will do meta-analysis with the outputs from formetascore on the same SNP from another study. I ran this

x<- formetascore(GASurv(fuptime, phenotype),data)

I got this

Error in .subset2(x, i, exact = exact) : no such index at level 1

Obviously I am not doing this right. Is my syntax correct? What is the formula for survival data? Any help appreciated.

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