scan.glm interaction term interpretation

Questions about GenABEL (aka *ABEL) suite of packages
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wilmotb
Posts: 2
Joined: Sun Dec 07, 2014 6:48 pm

scan.glm interaction term interpretation

Postby wilmotb » Sun Dec 07, 2014 9:16 pm

Hello,
For the output of scan.glm in a case/control association using a g x e term, does the P1df give the p-value for the interaction term for the covariate * SNP? And the effB, would be the effect size of the B allele in the interaction?
Thanks!
Beth

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