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by lckarssen
Tue Mar 01, 2011 10:31 pm
Forum: ProbABEL
Topic: [SOLVED] Input "filevector" into ProbABEL
Replies: 4
Views: 4761

Re: Input "filevector" into ProbABEL

You're almost there! The -i option is for the info file returned by Mach (a normal textfile), the -d options specifies the dosage file (in DatABEL format), this is where you use the .fvi file (it will look for the accompanying .fvd file itself. The -m option is for the map file, for e.g. HapMap impu...
by lckarssen
Mon Feb 21, 2011 5:15 pm
Forum: ProbABEL
Topic: [SOLVED] Input "filevector" into ProbABEL
Replies: 4
Views: 4761

Re: Input "filevector" into ProbABEL

In order to use the files in DatABEL format you can specify the index file (the .fvi file) when calling probABEL. This also works in the probABEL config file. I guess we should indeed mention this in the manual. I've filed a bug report for that at https://r-forge.r-project.org/tracker/index.php?func...

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