Search found 3 matches

by sigridbo
Thu Apr 06, 2017 3:34 pm
Forum: GenABEL
Topic: [SOLVED] mach2databel - Error in dimnames..
Replies: 3
Views: 3290

Re: [SOLVED] mach2databel - Error in dimnames..

I managed to find the solution. Which was not the id's in the .dose-files but the markers (positions) in the info-files. After imputation, SNPs with several alleles, or with additional indels or deletions, are separated into different rows in the .vcf-files, meaning that each "SNP" in the ...
by sigridbo
Mon Apr 03, 2017 10:48 am
Forum: GenABEL
Topic: [SOLVED] mach2databel - Error in dimnames..
Replies: 3
Views: 3290

Re: mach2databel - Error in dimnames..

I think we found the solution. The vcf-files contain several variants of the same marker, e.g. biallelic SNPs, indels or deletion, separated on several lines. This means that one marker (on position) may appear several times in the vcf-file. When removing the "duplicates", the program seem...
by sigridbo
Mon Feb 13, 2017 10:29 am
Forum: GenABEL
Topic: [SOLVED] mach2databel - Error in dimnames..
Replies: 3
Views: 3290

Re: mach2databel - Error in dimnames..

Thank you very much! Another think I could mention is that the .dose-file was on the format: 9455456984_RO6C01->9455456984_RO6C01 MLDOSE 0.745 0.001 0.864 ...etc. 9455458937_RO1CO2->9455458937_RO1CO2 MLDOSE 0.869 0.001 0.866 ...etc. 9456874354_RO5CO1->9456874354_RO5CO1 MLDOSE 0.912 0.001 0.853 ...et...

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