Search found 3 matches

by LinnMari
Wed Jan 11, 2017 10:20 am
Forum: GenABEL
Topic: Map file questions/problems convert.snp.ped [SOLVED]
Replies: 4
Views: 1231

Re: Map file questions/problems convert.snp.ped

Thank you for the suggestion, I tried something I probably should have tried a lot sooner and that was to save the file in another format, the map files I have used earlier have been saved as .txt (tab), now I tried to save the same file as .txt (Windows), which are some of the options I have on Mac...
by LinnMari
Mon Dec 12, 2016 10:25 am
Forum: GenABEL
Topic: Map file questions/problems convert.snp.ped [SOLVED]
Replies: 4
Views: 1231

Re: Map file questions/problems convert.snp.ped

Update: I have checked the different map files and all the map files I have edited (to either fewer columns or inserting a header), are reported to have 0 lines when I check these in Terminal with wc -l. The only file with correct number of lines (SNPs) is the one with 4 columns (the first example i...
by LinnMari
Mon Dec 05, 2016 12:40 pm
Forum: GenABEL
Topic: Map file questions/problems convert.snp.ped [SOLVED]
Replies: 4
Views: 1231

Map file questions/problems convert.snp.ped [SOLVED]

I'm having some problems loading my map file -First of all my map file is not sorted on chromosome, I understand that this is not an issue as long as the map file align with the order of the ped file? Here is how the first lines look: 25 BICF2G630100019 0 31558578 25 BICF2G630100032 0 31570089 25 BI...

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