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by CRW
Wed Jun 29, 2016 11:34 am
Forum: GenABEL
Topic: coding of "half deletions"
Replies: 0
Views: 1118

coding of "half deletions"

Hello, I am trying to load canola hybrid SNP data in GenABEL. Since I created the hybrids in silico from the Illumina genotyping files of the parents, some hybrids can contain "half deletions" (e.g. A-). According to the GenABEL manual "Accepted allele codes: 1/2, A/B, A/T, A/G, A/C, ...

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