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by kapr_genabel
Tue Jul 12, 2016 2:02 pm
Forum: GenABEL
Topic: check.marker and maf
Replies: 0
Views: 1857

check.marker and maf

Hello @all I working on genome wide association analysis with GenABEL, of fungal genome data, with more than a million SNPs. I am able to do descriptives.trait and descriptives.marker scan of my genotype and phenotype and descriptive.scan of raw data. But when i go quality check of my data with chec...
by kapr_genabel
Wed Jul 06, 2016 1:23 pm
Forum: GenABEL
Topic: descriptives.scan how to save output
Replies: 2
Views: 1393

Re: descriptives.scan how to save output

Hi sorry for the delayed reply.
I wanted it in a text file. anyways i have figured it out thank you for your response.

KRP
by kapr_genabel
Thu Jun 23, 2016 10:09 am
Forum: GenABEL
Topic: descriptives.scan how to save output
Replies: 2
Views: 1393

descriptives.scan how to save output

Hello GenABEL users. I am doing GWAS of a fungal genome that has more than One Million SNPs. This is my first time analysis with GenABEL. I would like to know how to save the descriptives.scan results into a file. (i was able to save top 10, 100 etc,) but I wanted to save all the hits into a file. b...

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