Search found 3 matches

by katiechan
Fri Aug 14, 2015 8:05 am
Forum: GenABEL
Topic: Error running mach2databel()
Replies: 0
Views: 3080

Error running mach2databel()

Hi there, I tried to convert my MACH version imputed data to datABEL format using the following command: library(DatABEL) library(GenABEL) mach2databel("machout_dose.chr18", "machout.chr18.info", "chr18") But I got the following error: Trying to set name of vars out of ...
by katiechan
Thu Aug 06, 2015 11:14 pm
Forum: ProbABEL
Topic: Extract SNPs for association test
Replies: 3
Views: 2371

Re: Extract SNPs for association test

Thank you for the instruction! I have tried to get a list of snp names (in data frame format) that I would like to extract and the dimension of the list of snp names is: [1] 9563 1 But, I got the following error when I tried to do the third lines of code in the previous post: Error in convert_intlog...
by katiechan
Fri Jun 05, 2015 8:23 pm
Forum: ProbABEL
Topic: Extract SNPs for association test
Replies: 3
Views: 2371

Extract SNPs for association test

I have imputed SNPs data in filevector format. I wonder how I can extract SNPs within a certain genomic region, i.e. chr: start-end in ProbABEL for some "candidate gene" association test. Thank you!

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