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by Annemieke
Mon Oct 19, 2015 12:14 pm
Forum: GenABEL
Topic: mlreg error zero elements in diagonal
Replies: 0
Views: 2670

mlreg error zero elements in diagonal

Hi all, I would like to do logistic regression analysis in GenABEL for about 300 cases and 5000 controls for about 200,000 SNPs, for which I use the following command; logreg_all<-mlreg(outcome~sex, data_set, gtmode = "additive", trait.type = "binomial", propPs = 1) However, I ge...
by Annemieke
Wed Apr 08, 2015 2:28 pm
Forum: GenABEL
Topic: convert.snp.illumina First three fields are missing line 2
Replies: 3
Views: 2194

convert.snp.illumina First three fields are missing line 2

Hi, I used the convert.snp.illumina to convert my RData file with my genotype data My RData file looks like this: name chr pos strand 10414 10872 10904 10954 10915 10917 1 200047 2 219793146 + AA AA AA AA AA AA 2 200050 2 219797929 - GG GG GG GG GG GG 3 200251 1 20850335 - AC AC AA AC AC CC 4 200261...

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