Search found 3 matches

by ginevrab
Wed Oct 05, 2016 8:25 am
Forum: ProbABEL
Topic: Installing MixABEL on Ubuntu 16.04
Replies: 0
Views: 1243

Installing MixABEL on Ubuntu 16.04

Hi all, I have a problem with MixABEL installation. I have already read all the related posts but none resolved my problem. I've talked to Nicola Pirastu and he advised me to write to the forum. 1) I'm using Ubuntu 16.04 server 2) gcc compiler (Ubuntu 5.4.0-6ubuntu1~16.04.2) 5.4.0 20160609 3) R vers...
by ginevrab
Wed Mar 25, 2015 9:37 am
Forum: ProbABEL
Topic: palogist related individuals & mmscore
Replies: 2
Views: 2259

Re: palogist related individuals & mmscore

Hi Lennart, I had already generated the inverse of the correlation matrix for binary traits modifying the mmscore.R script for palinear and using the formula on ProbABEL Manual. Then I run two analyses (palogistic with mmscore option): the first with a pheno file where the trait was binary_trait_res...
by ginevrab
Tue Mar 24, 2015 3:00 pm
Forum: ProbABEL
Topic: palogist related individuals & mmscore
Replies: 2
Views: 2259

palogist related individuals & mmscore

I have to run a GWAS on a binary trait with data that include pedigrees. So I decided to use ProbABEL. In order to use the mmscore option for palogist, I followed the example of mmscore.R for generating the Inverse of the correaltion matrix. Subsequently, in the mmscore.R example script, which is fo...

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