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by msarguru
Thu Oct 19, 2017 5:28 pm
Forum: ProbABEL
Topic: Phenotype file and dose or probability file did not match at line
Replies: 0
Views: 114

Phenotype file and dose or probability file did not match at line

Hello all, I guess this is a known bug, that throws when running either the palinear or palogisitc. I tried to compare the phenotype file and genotype file, the sampleID matches well (ID in phenotype file same as genotypefile (line number -1) taking the header in the phenotype file in to account) li...
by msarguru
Tue Feb 10, 2015 9:53 am
Forum: ProbABEL
Topic: Robust option in GxE interaction is highly inflated to norSE
Replies: 1
Views: 1302

Robust option in GxE interaction is highly inflated to norSE

Dear all, I am running this GWAS interaction analysis on unrelated individuals * LINEAR reg. Because of the model misspecification and possible heteroscedasticity, i selected the robust SE option instead of the standard/normal SE. While I believe Robust SE is implemented to correct the inflation see...

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