Search found 4 matches

by lkadalayil
Wed Jul 22, 2015 1:54 pm
Forum: GenABEL
Topic: MetABEL bug?
Replies: 7
Views: 3203

Re: MetABEL bug?

I am doing a meta-analysis using MetABEL as I write this. Has the bug of swapping allele columns and the change in sign for the beta values been fixed? Also the paper posted by Matteo does mention that one can do Q statistic and I2 index in MetABEL. I searched the MetABEL manual but could not find h...
by lkadalayil
Wed Jul 22, 2015 10:39 am
Forum: GenABEL
Topic: metABEL
Replies: 0
Views: 2922

metABEL

Can MetABEL do heterogeneity test? Also separate fixed and random effect analyses?
by lkadalayil
Mon May 18, 2015 12:50 pm
Forum: GenABEL
Topic: GAsurv
Replies: 0
Views: 2708

GAsurv

I am new to UNIX, R and GenABEL. Need to do a survival analysis using foremetascore and GAsurv, with and without covariates. The command I used successfully is data1<- formetascore(GASurv(fuptime, Status)~1+cov, data, mlreg, verbosity=1) What do ~, 1 and + mean here? I would like to do an analysis w...
by lkadalayil
Fri Feb 06, 2015 2:01 pm
Forum: GenABEL
Topic: formetascore
Replies: 0
Views: 2374

formetascore

I am a new comer to GWAs. I would like to run formetascore on a test dataset 'data' on 1 SNP. I will do meta-analysis with the outputs from formetascore on the same SNP from another study. I ran this x<- formetascore(GASurv(fuptime, phenotype),data) I got this Error in .subset2(x, i, exact = exact) ...

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